Scientific publishing and data management

We offer support and assistance with describing the implementation of open science principles in your grant proposals, and fulfilling these conditions during project implementation. We focus on the areas of open access to publications, data management, and the use of author identifiers.

Send a query MU Open Science website

Open Access

Open Access

Open Access is a publication method that ensures free, permanent and unrestricted access to scholarly outputs. This concerns text publications such as peer-reviewed scientific articles and their manuscript versions, conference papers, monographs, and others. Open access may be the author's decision or a project requirement.

Open Access publishing models

Green OA

Self-archiving of works in open repositories. In this model, the authors continue to publish in the traditional way in subscription-based or open journals, but at the same time store full texts in digital repositories. Open Access may be limited by the publisher’s licensing conditions.

If authors want to publish using the Green Open Access model, they must first find out the publisher’s conditions for self-archiving, either on the publisher’s website or using the Open policy finder. For example, the publisher may delay the release of an article (an embargo period) or determine which version of the article the author may publish.

To choose the right repository, the authors can use the OpenDOAR service. Authors for MU can also take advantage of the MU Repository.

Gold OA

Publishing in open access journals. This method of publishing is provided by the publisher of an open access peer-reviewed journal in which the authors can publish their articles.

The basic step in publishing using the Gold Open Access model is to choose a suitable journal. There are several types of open journals for authors to choose from:

  • Diamond/Platinum journals – the entire journal content is available free of charge, the financial costs are covered by the publisher of the journal. These are often journals produced by scholarly communities or university publishers.
  • Paid open access journals – the entire content of the journal is available to readers free of charge; publication fee (also called APC) that covers the costs associated with publishing and peer-review are paid by the author.
  • Hybrid journals – concerns publication in closed journals that will make the selected article available in Open Access mode after the author has paid the publication fee.

When searching for a suitable journal, authors can use the DOAJ service or contact us.

Embargo period

An embargo is a time restriction on access to a scientific publication after its publication. During the embargo, the article is only available to subscribers to the journal.

  • Zero embargo: The article is freely accessible immediately after publication.
  • One year embargo: The article is only accessible to journal subscribers for one year and then authors can upload it to repository.

Public licences

Public licenses are the easiest way to ensure that a published work meets all the conditions and characteristics of Open Access, such as immediate access and reuse. The most common public licenses are Creative Commons providing the authors with six different variants of CC licenses to choose from.

In addition to Creative Commons, there are other public licenses, such as GNU, Apache, MIT, and licenses from individual institutions. These licenses allow authors to define the terms of use for their works, thereby ensuring their wider availability. The choice of a suitable license depends on the specific requirements of the author and the type of work.

Selected publication repositories

No description

The institutional repository in IS is intended for publications by authors from MU.

Go to MU Repository

No description

Zenodo is a globally used, multidisciplinary repository for publications and data, managed by CERN.

Go to Zenodo

No description

OpenAIRE serves as a hub for resources and tools to support open science.

Go to OpenAIRE

Frequently asked questions (FAQ)

I want to publish in an open journal. How do I proceed?

If authors decide to publish their article using the Gold Open Access model, the first step is to find an OA journal. To choose a suitable journal, they can use the DOAJ service. The service provides a list of open access peer-reviewed journals across all fields of science.

If the selected journal requires an APC (Article Processing Charge), a fee for publishing an article, you must secure a source for its payment. Authors from MU are eligible for discounts on APC fees from selected publishers, and the cost can also be included as part of a grant application.

What should I do if I have an article published in a closed journal and I need to publish it in an Open Access model?

It is important to find out the conditions of the journal publisher for self-archiving, i.e., whether Green Open Access method of publishing is allowed. Authors can find this information using the Open Policy Finder or on the publisher’s website. Depending on these conditions, you can choose the right repository for storing your article. The OpenDOAR service can help you choose the repository.

If the publisher does not allow self-archiving, do not hesitate to contact us.

What should I do if my chosen journal does not comply with the embargo of the funding provider?

Contact the publisher regarding the possibility of reducing or eliminating the embargo in accordance with the terms and conditions of the financial provider. If they are unwilling to accommodate you, please contact us.

I don't know how to choose a license / what a license means / what licenses the selected journal supports.

If you are unsure which licenses are accepted for your project or where to find information about licenses from your chosen publisher, please contact us. If you need to comply with funder‘s conditions, we will need to know what the project scheme is and what conditions you have specified in your application. The appropriate license may also vary depending on the type of result.

APC

APC

Article Processing Charge (APC) represents the publisher’s costs associated with publishing an open access journal. APC must be usually paid by the author if they decide to publish using the Gold Open Access model. Masaryk University, as a member of the CzechELib consortium, is entitled to discounts on APC. For authors from Masaryk University, therefore, the APC is partly or fully covered for some publishers.

Terms of use and list of publishers for MU

Selected publishers providing APC discounts 

  • No description

    Cambridge University Press offers free Open Access publishing for authors from MU.

    Details

  • No description

    Oxford University Press offers free Open Access publishing for authors from MU.

    Details

  • No description

    Sage Publishing offers 20% discount for Open Access publishing for MU authors.

    Details

  • No description

    Wiley offers free Open Access publishing for limited number of articles (45 per year) from MU authors.

    Details

Frequently asked questions (FAQ)

Who pays the APC?

The charge is paid by the author from the funds of the grant or the academic unit.

How much is the APC?

The amount of APC depends on several factors including the prestige of the journal and competition on the market. APC ranges from hundreds to thousands of EUR. The average price is about EUR 1,900 per article.

How do I find out how much the APC is?

The amount of the charge is mostly published on the publisher’s website.

Data management

Research data management

Proper storage and publication of research data contributes to the advancement of science and knowledge. We offer assistance in complying with the principles of open science and preparing a data management plan (DMP).

Data Management Plan

A Data Management Plan (DMP) is a document describing how data will be handled during a research project. It is created at the initial stage of the research and is continuously updated. It is often required by funding providers.

  • description of the data used (both reused and newly acquired),
  • data collection (methodology),
  • method of data description (documentation and metadata),
  • data storage during the project and access management,
  • data sharing plan,
  • legal and ethical issues,
  • plan for data deletion or long-term storage,
  • assignment of responsibility for individual areas.

Recommended tools for creating DMPs

  • Data Stewardship Wizard: a tool for supporting research data management offering sets of questions for all stages of the research process; allows export of DMPs (Data Management Plans) in various templates (including Horizon Europe), group collaboration with tracking of changes made, and linking to projects in INET
  • DMPonline: a less robust tool for creating DMPs; allows institutional login, includes help for individual fields, and offers export in various formats

FAIR principles

The acronym FAIR refers to four principles that data should comply with. Open access is not a prerequisite—not all data can be made available, for example, in the case of sensitive data. Another important principle is the right of first use belonging to the researcher or team that collected the data. Data can have varying degrees of openness; making data available according to FAIR principles does not mean automatic access for anyone. The starting point is the principle of “As open as possible, as close as necessary.”

  • Findable – easily found by people and machines, stored in a suitable repository and described with high-quality metadata
  • Accessible – clear information about the conditions and possibilities for using the data is provided
  • Interoperable – data is stored in an open and standardized format and described using controlled vocabularies
  • Reusable – metadata sufficiently describes the context of the data: its license, origin, method of collection, explanation of abbreviations, file naming and structure, software used, and other relevant information

FAIR principles in detail FAIR checklist

Choosing a suitable repository for data

There are many general and field-specific data repositories where you can store individual data sets or data for publications. The choice of a suitable repository depends on the type of data and field conventions. It may also be guided by the requirements of the funder or journal. We will be happy to help you with your selection.

What to consider when choosing a repository

  • Field-specific practices
    • If possible, choose a field-specific repository for storing your data. This can help with the dissemination and usability of your data.
  • Credibility
    • The funder may require a certified repository (e.g., CoreTrustSeal).
  • Assignment of a persistent identifier
  • Provision of open access to data
  • Clear statement of the conditions for data use
    • License assignment is usually part of uploading a dataset to a repository.
  • Form of metadata presentation
  • Versioning option
    • This allows updated versions of data to be uploaded while retaining the original versions.

Search Re3data repository registry

Selected data repositories

No description

The Czech National Repository (in pilot operation) is multidisciplinary and used for data for which no suitable field-specific solution exists.

Go to Repo

No description

Zenodo is a globally used, multidisciplinary repository for publications and data, managed by CERN.

Go to Zenodo

No description

The Open Science Framework is a platform for supporting openness throughout the research process, including pre-registration of research and hypotheses and, where applicable, publication of data.

Go to OSF

Frequently asked questions (FAQ)

How do I write a DMP if I don't have any data?

Data in the humanities has its own specific characteristics. Data may also include scans of archival materials, photographs, digital versions of works of art, or field notes. Materials administered by cultural institutions are subject to copyright, and researchers may only use them in a limited manner. All of this can be described in the DMP. It is usually possible to share at least metadata describing what data you are working with in the project. If you are unsure how to formulate your DMP, please do not hesitate to contact us.

Author identifiers

Author identifiers

Author identifiers are used to uniquely identify the authorship of publication results. We offer an overview of the most common identifiers and will be pleased to help you with creating them.

 

ORCID

Researcher ID 

Scopus Author ID

Manner of ID generation

manual

automatic

automatic

Matching of publications with ID

manual

manual

automatic

Supported platforms for matching results

different (WoS, Scopus, arXiv, etc.)

only Web of Science

only Scopus

Prerequisite for assigning an identifier

 

at least one record in WoS

at least two records in Scopus

The option to create an author’s portfolio

 

 

 

Predatory practices

Predatory practices in scientific publishing

If you suspect that you have been approached by a predatory journal or conference, please do not hesitate to contact us. We offer consultations and analysis to help you recognize the signs of a predator.

Basic characteristics of predatory journals

  1. Names similar to prestigious journals.
  2. Fast publication without thorough peer review.
  3. Unclear information about fees.
  4. Generic journal names.
  5. Insufficient contact details.
  6. Aggressive email campaign with tempting offers for fast publication.

Checklist

Basic characteristics of predatory conferences

  1. Mass and unsolicited emails.
  2. General conference names.
  3. Unrelated topics.
  4. Unclear organizational details.
  5. Aggressive email campaigns offering participation in conferences as keynote speakers.

Mgr. Pavla Martinková

faculty OS methodologist and data stewardess

e‑mail:

Mgr. Silvie Kořínková Presová, DiS.

faculty OS methodologist

e‑mail:

Vojtěch Bartoš

faculty OS methodologist

e‑mail:

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